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Preheat oven to 400°F. Remove stems from the mushrooms, set mushroom caps aside on a large baking sheet, and finely mince the stems.
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Melt butter in a large skillet over medium heat. Once the butter has melted, add chopped mushroom stems, garlic, and shallot to the skillet and sauté until tender and fragrant, about 2-3 minutes. Transfer veggies to a large bowl.
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Add crab cake mix, 1/4 cup parmesan (reserving the remaining parmesan for topping the stuffed mushrooms), thyme, and parsley to the bowl, and stir to combine the stuffing.
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Fill mushrooms evenly with stuffing and sprinkle with reserved parmesan cheese.
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Bake mushrooms for about 20-25 minutes or until the mushrooms are tender, cooked through, and the tops are golden. Serve warm.